build(dev-deps): Update biome to v2 (#4246)

* update biome to v2

* Run biome check --write

* Update biome.jsonc

Co-authored-by: Link <lts20050703@gmail.com>

* Fix config error

* Bump biome version

* Update website/yarn.lock

* Update biome to 2.1.3

---------

Co-authored-by: Link <lts20050703@gmail.com>

biome.jsonc

@@ -1,5 +1,5 @@
 {
-  "$schema": "https://biomejs.dev/schemas/1.9.4/schema.json",
+  "$schema": "https://biomejs.dev/schemas/2.1.3/schema.json",
   "formatter": {
     "enabled": true,
     "formatWithErrors": false,
@@ -8,8 +8,12 @@
     "lineEnding": "lf",
     "lineWidth": 150
   },
-  "organizeImports": {
-    "enabled": true
+  "assist": {
+    "actions": {
+      "source": {
+        "organizeImports": "on"
+      }
+    }
   },
   "linter": {
     "enabled": true,
@@ -44,21 +48,20 @@
     }
   },
   "files": {
-    "ignore": [
+    "includes": [
+      "**",
       // Ignore the package.json and leave yarn to format it
-      "package.json",
-      "node_modules",
+      "!**/package.json",
+      "!**/node_modules",
       // Ignore turbo and docusaurus cache/stuff
-      ".docusaurus",
-      ".turbo",
-      // Remove the yarn script as it is minified
-      ".yarn",
+      "!**/.docusaurus",
+      "!**/.turbo",
+      // Remove the yarn script as it is minified,
+      "!**/.yarn",
       // Ignore build outputs
-      "bunTestsDist",
-      "build",
-      "coverage",
-      "denoTestsDist",
-      "dist"
+      "!**/build",
+      "!**/coverage",
+      "!**/dist"
     ],
     "ignoreUnknown": true
   }